Synthesis and structure-activity relationships of a novel and selective bone morphogenetic protein receptor (BMP) inhibitor derived from the pyrazolo[1.5-a]pyrimidine scaffold of dorsomorphin: the discovery of ML347 as an ALK2 versus ALK3 selective MLPCN probe

Bioorg Med Chem Lett. 2013 Jun 1;23(11):3248-52. doi: 10.1016/j.bmcl.2013.03.113. Epub 2013 Apr 11.

Abstract

A structure-activity relationship of the 3- and 6-positions of the pyrazolo[1,5-a]pyrimidine scaffold of the known BMP inhibitors dorsomorphin, 1, LDN-193189, 2, and DMH1, 3, led to the identification of a potent and selective compound for ALK2 versus ALK3. The potency contributions of several 3-position substituents were evaluated with subtle structural changes leading to significant changes in potency. From these studies, a novel 5-quinoline molecule was identified and designated an MLPCN probe molecule, ML347, which shows >300-fold selectivity for ALK2 and presents the community with a selective molecular probe for further biological evaluation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Activin Receptors, Type I / antagonists & inhibitors
  • Activin Receptors, Type I / metabolism
  • Animals
  • Bone Morphogenetic Protein Receptors / antagonists & inhibitors*
  • Bone Morphogenetic Protein Receptors / metabolism
  • Half-Life
  • Heterocyclic Compounds, 2-Ring / chemical synthesis*
  • Heterocyclic Compounds, 2-Ring / chemistry
  • Heterocyclic Compounds, 2-Ring / pharmacokinetics
  • Humans
  • Mice
  • Protein Binding
  • Protein Isoforms / antagonists & inhibitors
  • Protein Isoforms / metabolism
  • Pyrazoles / chemistry*
  • Pyrazoles / metabolism
  • Pyrazoles / pharmacokinetics
  • Pyrimidines / chemistry*
  • Pyrimidines / metabolism
  • Pyrimidines / pharmacokinetics
  • Quinolines / chemical synthesis*
  • Quinolines / chemistry*
  • Quinolines / metabolism
  • Quinolines / pharmacokinetics
  • Rats
  • Structure-Activity Relationship

Substances

  • DMH1 compound
  • Heterocyclic Compounds, 2-Ring
  • LDN 193189
  • ML347
  • Protein Isoforms
  • Pyrazoles
  • Pyrimidines
  • Quinolines
  • pyrazolo(1,5-a)pyrimidine
  • dorsomorphin
  • ACVR1 protein, human
  • Activin Receptors, Type I
  • Bone Morphogenetic Protein Receptors